Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LAML rs3133446 chr11:93196249 C/A 6.87E-5 108 6.13 12.17 16.3 KM Plot
LAML rs33825 chr19:33989245 C/T 1.27E-5 111 17.23 9.13 3 KM Plot
LAML rs33827 chr19:33986379 G/A 1.27E-5 110 17.23 10.67 3 KM Plot
LAML rs33980254 chr17:28592047 C/T 0.000116 111 19.82 15.7 6.1 KM Plot
LAML rs34071565 chr11:119712522 A/T 6.2E-5 109 15.2 10.67 0 KM Plot
LAML rs34133266 chr19:12549400 TA/T 1.87E-5 111 6.13 22.37 13.1 KM Plot
LAML rs34159706 chr10:1069190 C/T 1.64E-5 111 13.15 20.3 2.55 KM Plot
LAML rs34180883 chr14:77857190 G/A 0.000164 111 13.15 20.27 1.02 KM Plot
LAML rs34181875 chr1:43352494 A/AG 0.000186 109 15.23 10.67 1.02 KM Plot
LAML rs34204050 chr13:111023282 T/G 0.000126 111 13.2 19.33 0 KM Plot
LAML rs34270668 chr10:981685 G/A 6.36E-5 111 15.23 16.17 5.1 KM Plot
LAML rs34362312 chr10:956161 TC/T 4.43E-5 110 15.23 14.63 5.1 KM Plot
LAML rs34368826 chr3:48670827 G/T 0.000106 111 15.73 11.68 0 KM Plot
LAML rs34461118 chr19:12558588 T/A 1.56E-5 110 6.63 21.27 13.1 KM Plot
LAML rs34622227 chr17:28629819 T/G 0.000116 111 19.82 15.7 6.1 KM Plot